Syllabus

PHYS435

Spring 2004

Dr. Van Der Meer

WKU

 


 

1. BIOPHYSICS is listed as Physics 435, 4 credit hours (3 lecture + 1 laboratory). Text: hand-outs and copies of sections of different books. Class meets in TCCW 236, TR 12:30-1:45 pm, lab meets in the same room, initially, W 4-6pm.
2. Prerequisites: Physics 231+332 or 201+202 or 250, 260+270, and Biology 120/121, and Math 126, or permission of the instructor.
3. An introduction to the major fields of Biophysics (as defined by the Biophysical Society) in quantitative terms and with emphasis on physical and spectroscopic techniques applied in biomedical, biophysical and biochemical research.
4. Course Outline:

  A. Structure of biological macromolecules (classes of biological macromolecules; functions of these molecules; techniques for studying structure of them: Diffusion, Centrifugation, Osmosis, X-ray diffraction, NMR).
B. Cell membranes (Comparison of animal and plant cells; Common features of cell membranes; Fluid Mosaic Model; Spectroscopic Techniques for studying membranes {for electrical aspects of membranes see topic E, below}).
C. Muscle and related intracellular polymers (Mechanisms of muscular contraction; sliding-filament model; actin and myosin; mitotic spindle; cytoseleton).
D. Bioenergetics (Introduction; Principles of equilibrium thermodynamics; Free energy and the equilibrium constant; open and closed systems; ATP and ADP; application to muscle contraction; the science of losing weight).
E. Neurobiology and electrical properties of membranes (Nernst potential; electrical model of a membrane; voltage-gated channels; action-potentials; neurotoxins; neuron; synaps; neurotransmitter; organization of a system of neurons).
F. Kinetics (Introduction to enzymes; free energy of activation; catalysis; Michaelis-Menten model; Examples).
G. Photobiology (Photosynthesis; Monochromator; Photomultier; Effects of radiation; Ozon; Action spectrum).

5. The objective of this course is to instruct life science students and physics majors in Biophysics. The underlying physical reasons for biological phenomena are stressed. The student is expected to appreciate the fact that cells function according to the laws of physics, and to understand recent applications of physics to bio-medical problems.
6. Laboratory: depending on availability of equipment and biological samples:

  - centrifugation and lysis of blood cells and/or
- absorption spectroscopy, principles of tomography and/or
- X-ray diffraction and/or
- fluorescence spectroscopy and/or
- NMR

7. Homework. Problems will be assigned frequently
8. Grading. Three tests will be given. Each test has an closed-book part (essay questions) and an open-book part (problems). The average test grade represents 60% of the final grade, homework is 20%, lab-reports 10%, and the final 10%.
9. Office Hours: TR 9:30-11am-noon at TCCW 227. You may call me at 745-6205 or 615-859-7064 or e-mail me at wieb.vandermeer@wku.edu